Vyas Ramasubramani

2020

  • Ramasubramani, Vyas, Vo, Thi, Anderson, Joshua A., Glotzer, Sharon C. “A mean-field approach to simulating anisotropic particles.” The Journal of Chemical Physics 2020 link
  • Brandon Butler, Vyas Ramasubramani, Joshua Anderson, Sharon Glotzer “HOOMD-blue version 3.0 A Modern, Extensible, Flexible, Object-Oriented API for Molecular Simulations.” Proceedings of the 19th Python in Science Conference 2020 link
  • Vyas Ramasubramani, Bradley D. Dice, Eric S. Harper, Matthew P. Spellings, Joshua A. Anderson, Sharon C. Glotzer “freud: A software suite for high throughput analysis of particle simulation data.” Computer Physics Communications 2020 link

2019

  • C. S. Adorf*, V. Ramasubramani*, J. A. Anderson, S. C. Glotzer “How to Professionally Develop Reusable Scientific Software—And When Not To.” Computing in Science Engineering 2019 link
  • Simon, Anna J., Zhou, Yi, Ramasubramani, Vyas, Glaser, Jens, Pothukuchy, Arti, Gollihar, Jimmy, Gerberich, Jillian C., Leggere, Janelle C., Morrow, Barrett R., Jung, Cheulhee, et al. “Supercharging enables organized assembly of synthetic biomolecules.” Nature Chemistry 2019 link
  • Dice, Bradley, Ramasubramani, Vyas, Harper, Eric, Spellings, Matthew, Anderson, Joshua, Glotzer, Sharon “Analyzing Particle Systems for Machine Learning and Data Visualization with freud.” Proceedings of the 18th Python in Science Conference 2019 link

2018

  • Vyas Ramasubramani, Carl S. Adorf, Paul M. Dodd, Bradley D. Dice, Sharon C. Glotzer “signac: A Python framework for data and workflow management.” Proceedings of the 17th Python in Science Conference 2018 link
  • Carl S. Adorf, Paul M. Dodd, Vyas Ramasubramani, Sharon C. Glotzer “Simple data and workflow management with the signac framework.” Computational Materials Science 2018 link
  • Ramasubramani, Vyas, Glotzer, Sharon C. “rowan: A Python package for working with quaternions.” The Journal of Open Source Software 2018 link

2014

  • Sinha, Dhiraj, Shamayeva, Katsiaryna, Ramasubramani, Vyas, \v Reha, David, Bialevich, Vitali, Khabiri, Morteza, Guzanov'a, Alena, Milbar, Niv, Weiserov'a, Marie, Csefalvay, Eva, Carey, Jannette, Ettrich, R"udiger “Interdomain communication in the endonuclease/motor subunit of type I restriction-modification enzyme EcoR124I.” Journal of Molecular Modeling 2014 link